https://docs.pathomation.com/my/ 2026-04-18T14:31:23+0300 https://docs.pathomation.com/my/ https://docs.pathomation.com/my/lib/tpl/dokuwiki/images/favicon.ico text/html 2026-03-05T11:18:00+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=accepting_an_invite_to_join_an_organisation&rev=1772698680&do=diff I have received an invitation to join an organisation, what do I need to do? If you are invited to join an organisation you will receive an email with a link that first requires you to log in to your My Pathomation account and then guides you through the steps to join the organisation. text/html 2025-11-18T18:44:52+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=accessing_the_ai_menu&rev=1763480692&do=diff Accessing the AI image analysis menu Requesting an AI image analysis Start by selecting the slide you want to analyse. In the slide menu there is an AI button that opens the menu of available algorithms. You can select an algorithm compatible with the slide and the intended use. The menu has a standard naming convention logic to make this clear: All algorithms are grouped per provider and then further subdivided if they are intended for the full slide WSI or for a Region of interest (ROI) text/html 2024-01-30T12:48:55+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=adding_your_logo&rev=1706608135&do=diff Adding Your Logo Adding your own logo that will display across all content in your Organisation is a great way to add polish to your course content and show your users that this is a legitimate learning resource of your university / company. How to add a logo? text/html 2025-09-23T16:49:15+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=advanced_viewing_and_colour_adjustments&rev=1758635355&do=diff Advanced Viewing and Color Adjustments 1. The Viewport On the last page, you've seen how you can open one or many slides in the viewport, and then zoom, pan and rotate them. But what if you want some extra functions, or you're a minimalist and you find all the bars and sliders make the viewport look cluttered? text/html 2025-07-28T13:29:26+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=case_sharing_workflow_introduction&rev=1753698566&do=diff Introduction My Pathomation provides you with an easy way to create a dedicated case sharing space per Pathology speciality and manage the persons with access to review these cases This is based on the collection feature in combination with the groups feature. text/html 2026-03-23T13:26:47+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=costs_and_payment_for_using_ai_algorithms&rev=1774261607&do=diff Cost and payment for using AI algorithms The cost for using the Case Sharing and AI is composed of two elements. * The subscription to the plan includes 25GB storage for images, unlimited sharing, an organisation for 50 users and access to the Pathomation AI Market place. The subscription plan can be expanded in function of more storage space. The subscription fee is due monthly but users can also opt to pay upfront for 3 months or a full year. In case none of he standard formulas fit wit… text/html 2025-07-15T11:32:01+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=creating_a_new_organization&rev=1752568321&do=diff Creating a new Organization In My Pathomation you can work on your personal workspace (my workspace) or jump into an Organization. Why Organisations? Organisations in My Pathomation give you powerful tools on top of being able to host, share and annotate your slides with a personal account. Organisations also let you invite and manage up to 50 users text/html 2026-03-23T10:53:28+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=custom_and_fixed-size_annotations&rev=1774252408&do=diff Custom and Fixed-Size Annotations Do you want to make standard annotations for your project(s)? Do you not like the default annotation colours MyPathomation has available? Or do you need to make annotations that are the same size every time? We've got you covered with Custom Annotations. text/html 2022-10-20T11:55:40+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=data_compliance_and_pseudonymisation_blog_post&rev=1666256140&do=diff GDPR & Patient Data: Aiming at Privacy by Design GDPR (General Data Protection Regulation) in force in the European Europe since May 2018, regulates how personal/patient data is handled in Europe. The GDPR defines the obligations that data controllers and data processors must comply to. text/html 2026-03-23T13:34:08+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=data_compliance_and_wsi&rev=1774262048&do=diff Data compliance and WSI Privacy Regulations and WSI Whole Slide Imaging (WSI) is a relatively new category of patient health data. As such, recently, some efforts have been made to better understand how WSIs (whole slide images) can be utilized in a balancing act: maximizing individual and public benefit, while at the same time, restricting and protecting its access, whenever such access would pose a potential privacy risk and non-compliance with data privacy laws (e.g. GDPR). Although by itse… text/html 2026-03-23T13:55:53+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=enabling_multi_factor_authentication_mfa&rev=1774263353&do=diff Enabling Multi Factor Identification (MFA) Organizations that want to add extra security for their members can activate the requirement to use MFA. From the main menu click on the organization initials icon in the top right hand corner and select 'manage my organization' You can enable MFA here: text/html 2025-01-21T12:12:54+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=exporting_annotations&rev=1737450774&do=diff Exporting Annotations The video above will take you through how to export Annotations from a Collection. text/html 2026-03-23T13:49:53+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=fast_anonymization_with_pma.start&rev=1774262993&do=diff Fast anonymization with PMA.start How to Use the Anonymize Function Protecting sensitive medical data and the identity of a biopsy's owner is not only ethical/polite, it is a legal responsibility. Many of our software have features to hide potentially identifying information a slide may contain, such as by text/html 2026-03-23T14:00:30+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=glossary&rev=1774263630&do=diff Glossary * WSI - Whole Slide Image * Annotation - a graphical object or layer of object added to a WSI * Collection - a grouping of WSI that share a common context or purpose * Slidebox - a grouping of multiple Collections and/or slides with added metadata for complex projects text/html 2026-03-23T13:41:52+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=heath_data_as_a_part_of_interactions_between_health_care_professionals&rev=1774262512&do=diff Health Data as a part of interactions between Health Care Professionals Many misunderstandings exist about sharing patient information between Health Care Professionals. Most important there is no need to remove healthcare data because of privacy or consent if the sharing of information happens in a diagnostic or curative context. Removing background data like gender, age, antecendents actually induces a risk for error since these are all potentially relevant for making a diagnosis. In other w… text/html 2022-02-14T13:37:06+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_are_views_calculated&rev=1644835026&do=diff How are views calculated? Every time, someone opens your shared slide/case/collection/slidebox for the first time, it is calculated as a view. text/html 2025-07-11T17:13:10+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_add_a_collection&rev=1752243190&do=diff How to Add Collections 1. Walkthrough Steps 1) Go to “My collections” in the sidebar. 2) Click on “+ New collection” in the middle of the page, or at the top of the page if your account already has some collections 3) Choose a name for your collection and click on text/html 2025-07-15T11:30:56+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_add_a_slidebox&rev=1752568256&do=diff How to Add a Slidebox 1. When to Use a Slidebox Once you've uploaded some slides and created at least one collection, you can create a slidebox. A slidebox allows you to group and organize collections. Here you can also add metadata to your collections. text/html 2023-02-23T10:44:45+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_add_cases&rev=1677138285&do=diff How to add cases? A case can only be created from within a collection. 1) Click on “+ New case” on the top right of the page. 2) Choose a name for your case and press “Create” 3) Select the slides which you want to add to your case. text/html 2023-02-02T19:37:00+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_add_slides&rev=1675355820&do=diff How to upload slides? Users have multiple options available to upload slides. You can do this starting from your My Pathomation account or from PMA.start, our free viewer software for desktop use. When working in your My Pathomation account you have two options text/html 2025-07-11T16:25:37+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_create_and_manage_a_group_of_users&rev=1752240337&do=diff How to Create and Manage a Group of Users Within your organization it can be helpful to create subdivisions of users in groups, for example to give them access to different content such as in these examples: * Year 1 general biology class vs Year 2 human histology class text/html 2019-12-26T13:19:11+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_define_a_case&rev=1577355551&do=diff How to define a case? A case is a group of slides that belong together at a certain level. text/html 2019-12-26T13:40:33+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_define_a_collection&rev=1577356833&do=diff How to define a collection? A collection is the most generic term in the organization of slides. A collection is a set of cases which belong together at a certain level. text/html 2020-01-28T13:54:45+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_define_a_mini-site&rev=1580208885&do=diff How to define a mini-site? A mini-site is a single page website, with its own domain name. Here you can highlight one or more specific collections. text/html 2020-03-25T14:22:16+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_define_a_slidebox&rev=1585135336&do=diff How to define a slidebox? A slidebox is a single page website, with its own domain name. Here you can highlight one or more specific collections. text/html 2026-03-13T14:50:02+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_download_pma.start&rev=1773402602&do=diff How to Download PMA.start PMA.start is software that runs locally on your computer. You need to download the software first. Contact our helpdesk <helpdesk@pathomation.com> and request a download link. text/html 2020-02-04T13:06:25+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_host_a_mini-site&rev=1580810785&do=diff How to host a mini-site? Before you make a mini-site, make sure you've already uploaded some slides and created at least one collection to add to your mini-site. 1. Go to “mini-sites” in the sidebar 2. Click on “Add mini-site” on the top right of the page text/html 2022-02-14T12:32:01+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_host_a_slidebox&rev=1644831121&do=diff How to add a slidebox? Before you make a slidebox, make sure you've already uploaded some slides and created at least one collection to add to your slidebox. 1. Go to “slidebox” in the sidebar 2. Click on “+ New slidebox” on the top right of the page text/html 2024-02-21T15:33:24+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_make_a_course&rev=1708518804&do=diff How to Make a Course The Courses option allows you to build content consisting of interactive images and text that can be shared with students or collaborators. You will need to be in an organisation to create a course, but you can access any courses that are shared with you. text/html 2025-09-01T11:47:16+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_make_an_account_in_my_pathomation&rev=1756716436&do=diff How to Create an Account in My Pathomation Start by clicking on the “Register” tab or clicking on <https://my.pathomation.com/register> In case someone sent you an email invite to join an organization and you have no account yet, you are guided to the registration process after clicking the accept button. text/html 2024-01-31T11:54:29+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_make_quizzes&rev=1706691269&do=diff How to Make Quizzes The Quizzes tab allows you to flexibly integrate your fully interactive images with many different question formats which can be shared with students or collaborators. You will need to be in an organisation to create a quiz, but users can access any quizzes that are shared with them. text/html 2022-02-14T15:45:37+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_share_a_case&rev=1644842737&do=diff How to share a case? 1. Go to your cases via “My cases” on the sidebar. 2. All your cases are shown in the gallery. On every case, you can see the share button. Click share button and a new window pops up. 3. There are different ways to share your case. text/html 2023-11-09T16:46:33+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_share_a_collection&rev=1699537593&do=diff How to Share a Collection 1. Go to your collections via “Collections” on the sidebar. 2. All your collections are shown in the gallery. On every collection, you can see the share button. Click the share button to open the share menu. 3. There are different ways to share your collection. text/html 2020-01-29T13:07:09+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_share_a_mini-site&rev=1580292429&do=diff How to share a mini-site? text/html 2023-11-09T16:44:25+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_share_a_slide&rev=1699537465&do=diff How to Share Slides 1. Go to your slides via “Slides” on the sidebar. 2. The standard view setting is list view, in this view you need to click the share icon which you can find to the right of the slide thumbnail. If you work in the gallery view you can see the share button below the slide thumbnail. Click the share button to open the share menu. text/html 2023-11-09T16:49:09+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_share_a_slidebox&rev=1699537749&do=diff How to Share a Slidebox 1. Go to your slideboxes via “Slideboxes” on the sidebar. 2. All your slideboxes are shown in the gallery. On every slidebox, you can see the share button. Click the share button to open the share menu. 3. There are different ways to share your slidebox. text/html 2026-03-23T13:20:59+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_upload_slides&rev=1774261259&do=diff How to Upload Slides Important Note: Some complex whole slide image types consist of multiple files & folders which require joint context to be read correctly. These include .mrxs, .isyntax, .mds, .mdsx, .dzi,.vsi, … The My Pathomation software upload process verifies the integrity of the files and will warn you in case of missing files. text/html 2026-03-23T12:30:13+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_use_annotations&rev=1774258213&do=diff How to Use Slide Annotations My Pathomation comes with a set of tools to annotate and draw on your slides. Besides the annotations you make yourself annotations can also be generated by AI image analysis algorithms, for more details on this function look at section text/html 2023-11-10T10:38:08+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_use_tags&rev=1699601888&do=diff How to Use Tags and Bookmarks To make it easy to classify and find slides you have the possibility to bookmark slides in several ways. You can use stars, flags and tags. 1. Tags The 'Tag' function enables you to add free text information regarding slides and use the information captured in the tags for searching and organising your content. You can add as many tags as you like to a slide. This is how you can add tags: text/html 2026-03-23T13:25:45+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_use_the_ai_algorithms_available_in_my_pathomation&rev=1774261545&do=diff How to use the AI algorithms available in My Pathomation My Pathomation is a secure and GDPR-compliant platform with an onboard third-party AI menu. By offering access to AI algorithms in the cloud, the platform makes it easy to start using AI image analysis. After uploading your images, you can directly choose the algorithm you want to use and obtain results without lengthy setup or complex integration into hospital IT infrastructure. text/html 2023-11-09T17:31:13+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_use_the_dicomizer_tool_for_anonymisation&rev=1699540273&do=diff DICOMizer Tool Instructions This guide explains step by step what you need to do to convert any type of whole slide image in a DICOM format and remove all identifiable data. PMA.start You need to have PMA.start and the DICOMizer software installed on your pc. Look for these logos: text/html 2024-01-30T16:01:58+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=how_to_view_quiz_reports&rev=1706619718&do=diff How to View Quiz Reports So, you've made your first quiz and you've sent it out to your students/pathologists. You're a real pro at Pathomation, and we're proud you got this far. But... wait. How do you know if your students are even doing your assignments? text/html 2024-02-01T10:18:33+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=integrating_an_interactive_slide_into_powerpoint&rev=1706771913&do=diff Integrating Your Interactive Slides into PowerPoint. It's very easy to boost your PowerPoint quality with sharing a slide with a QR code that people can scan and interact with on their phones and laptops. But we can go one step further In this article you will learn how to integrate a fully interactive slide directly into a PowerPoint slide that you can navigate during your talk without ever leaving the presentation. Your PowerPoint presentation will have digital microscope capabilities. text/html 2026-03-23T13:29:26+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=interpreting_ai_results&rev=1774261766&do=diff Interpreting AI results After completion of an image analysis AI request the results will be available in the form of annotations in the viewer and as a set of results. If annotations are text labelled by the algorithm the text will appear in the viewer and scale with the zoom level. You can hide the text with the label button for better visibility of the image. text/html 2024-11-14T14:07:47+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=inviting_users_to_the_organization&rev=1731582467&do=diff Inviting Users to an Organization Having an Organization in My Pathomation allows you to collaborate with other pathologists, create and assign exams to users, and much more. Of course, to collaborate you need some people to collaborate with. This page will take you through how to invite users into the Organization via the management tab. text/html 2024-11-14T14:17:22+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=inviting_users_to_your_org_with_an_open_link_or_qr_code&rev=1731583042&do=diff Generating an Open Invitation Link / QR code to an Organization Having an Organization in My Pathomation allows you to collaborate with other pathologists, create and assign exams to users, and much more. Of course, to collaborate you need some people to collaborate with. text/html 2025-07-11T15:42:50+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=license_and_user_management&rev=1752237770&do=diff License and User Management License management is key if you have different years of students, want to manage different content access forgroups of collaborators or need to time when people can access content in your organisation. There are 50 user licenses as standard with a My Pathomation organisation, and you can flexibly assign these. If you need more than this, please text/html 2025-07-28T11:52:53+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=making_a_case_collection&rev=1753692773&do=diff Introduction Case collections are a good way to organise images by case, add .png macro images or scanned reports and then share them for reviewing by others. If you work with multiple people and you want to have each person or group of persons to only have access to their cases, create separate collections for each intended use. The quick share allows you to share the whole collection in one go with anyone, or use the group function to assign a collection to registered users only. text/html 2024-09-01T13:34:28+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=member_view&rev=1725186868&do=diff Member View As a manager or editor of an organisation, you may want to test how your Quizzes work, or complete a Quiz made for you by another user. To do this you can enter 'Member View' First click your initials in the top right and click 'Enter Member View' text/html 2023-11-09T17:39:21+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=my_pathomation_mobile_app&rev=1699540761&do=diff My Pathomation mobile app The mobile application of My Pathomation is now available on the Play store: <https://play.google.com/store/apps/details?id=com.pathomation.myapp&pcampaignid=web_share> text/html 2023-11-09T16:23:55+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=my_shares&rev=1699536235&do=diff Shares My Pathomation lets you share your slides, cases , collections and slideboxes with whoever you want! People receiving your shares will see exactly what you want them to. The whole slide/collection/slidebox is shared by default, but by configuring the advanced options when you hit the text/html 2024-10-08T11:08:49+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=new_page&rev=1728374929&do=diff Lorem ipsum text/html 2025-01-21T12:10:13+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=other_features_of_collections&rev=1737450613&do=diff Annotations in Collections The video above will take you through how to use Annotations in Collections, and how they behave. The process is also described below: You can also edit a slide’s annotations by clicking the “Edit annotations” button (2). These annotations will only be visible in the collection. text/html 2025-07-11T15:28:10+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=pathomation_youtube&rev=1752236890&do=diff Prefer to Learn with Video? We're on YouTube, too. For guides on everything from including interactive slides on your powerpoint, to sharing a case via whatsapp, you can find out more on our YouTube channel: <https://www.youtube.com/@pathomationbvba1198> text/html 2025-07-14T10:50:45+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=quick_share_options&rev=1752479445&do=diff How to Quick Share Cases These steps explain how to share a case that exists as a folder in the file tree. (1) From the slides sidebar, select the case folder in the file tree view (2) Work in List view for ease of use (3) Select the folder tickbox (4) Click the text/html 2026-03-23T10:37:10+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=release_notes&rev=1774251430&do=diff Release Notes Current release Build #3.1.0 (as of Monday March 23th, 2026) = My Pathomation 3.1.0 – Release Notes = 'Release Date:' 20 March 2026 'Release Type:' Minor Release Overview My Pathomation 3.1.0 introduces improvements based on customer feedback. This release focuses on improving slide upload reliability, enhancing support for certain image formats, and strengthening account security to support future platform capabilities. text/html 2024-09-01T14:51:48+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=retakeable_quizzes&rev=1725191508&do=diff Retakeable Quizzes For practice exams it is important for your users to be able to retake the quiz. Setting a quiz to be retakeable is easy - simply go to the edit page of a quiz and check the 'Users can score multiple times' option. Users will then see the dialog below, or be asked if they'd like to score again when viewing their previous results. text/html 2026-03-23T13:28:19+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=running_an_ai_algorithm_on_a_set_of_slides&rev=1774261699&do=diff Running an AI algorithm on a set of slides Selecting the slides and AI algorithms From the Slides sidebar menu you can see all folders and slides available to you. The AI icon is shown next to each slide, you can open the menu to start an AI algorithm for an individual slide by clicking the icon, the same icon is visible after opening an image in the top bar and will also open the menu to select an algorithm for that individual slide. text/html 2025-07-11T16:26:42+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=sharing_as_an_org&rev=1752240402&do=diff How to Assign Content Content can be made available to some or all of your users via Groups. This allows you to manage several different classes or trainings all via the same interface. Walkthrough Once you've created a group and have content you'd like to share, click on the groups tab in the sidebar and click the edit [1] icon of the group you want to assign content to. text/html 2024-02-21T17:19:39+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=sharing_courses_and_quizzes&rev=1708525179&do=diff Sharing Courses and Quizzes Sharing courses can be done using the share icon to the right of the name, or if you have an organisational account you can assign them to a group. Quizzes can only be made by organisations and shared with members of that organisation. This ensures the tracability of results and prevents dummy accounts being created to work out all the answers. text/html 2026-03-23T13:47:04+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=sidebar&rev=1774262824&do=diff Getting started * How to make an account in My Pathomation * Your dashboard landing page in My Pathomation * Upgrading your account * Youtube walkthroughs * Release notes Slides * How to upload slides * Viewing slides * Snapshots * Advanced viewing and colour adjustments * How to use annotations * Custom and fixed-size annotations * How to use tags and bookmarks Collections * What is a collection and what can I use this for * How to create a collection * Maki… text/html 2025-07-11T17:08:03+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=snapshots&rev=1752242883&do=diff Snapshots For reporting and documenting what you saw it can be really useful to generate a simple .png format picture snapshot. Remember the snapshot button is only visible if selected in the viewport configurations. You should select this setting, please note you can decide to have the scalebar included or not: text/html 2025-07-15T11:31:38+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=start&rev=1752568298&do=diff My Pathomation Start Page My Pathomation is a cloud platform offering services for digital pathology applications. My Pathomation supports a wide range of image file formats including fluorescent and Z-stacked images. Users can both create a personal space or run an organisation with multiple members. text/html 2023-11-14T14:10:04+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=switching_workspaces&rev=1699960204&do=diff Switching Between Workspaces and Organisations You can select the workspace or organisation you want to work in by pressing the account button with your initials in the top right of the screen (1). Then select your personal account (My Workspace) or one of your Organisations (2). text/html 2025-11-11T15:00:05+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=terms_of_use_privacy_and_data_processor_agreement&rev=1762862405&do=diff Terms of use and Data Processor agreements My Pathomation is designed to be safe with data. End users will find appropriate documentation in our: * Terms of use: <https://my.pathomation.com/terms> * Privacy statement: <https://my.pathomation.com/policy> * Data processor agreements: <https://my.pathomation.com/processor_agreement> text/html 2025-07-28T12:18:08+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=tips_to_upload_cases&rev=1753694288&do=diff It is best to think ahead when you share cases. You can choose between Quick shares for occasional sharing or set up a Group Share Workflow if you share often and work with a team of reviewers for dedicated indications. In any case start with a logical naming convention and structure you image files in a folder. We recommend to use this approach: text/html 2026-03-23T13:22:58+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=upgrading_your_my_pathomation_account&rev=1774261378&do=diff Upgrading Your Account Whether you're looking for more cloud storage beyond the free 10GB, you want to expore featuring fully interactive slides embedded in course / exam content, or you need to collaborate with others through an organisation, it's time to upgrade your account. text/html 2025-07-14T11:36:33+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=using_a_group_for_sharing&rev=1752482193&do=diff Using Groups to set up a sharing workflow Content can be made available to some or all of your users via Groups. This allows you to manage several different Case reviewers and Case Collections all via the same interface. Here you will see the steps to create a 1/1 relation between a Case Collection and the person assigned to review it. You only need to set this up once, the workflow for case review will link access for new cases added to your Collection automatically to the assigned reviewer. text/html 2025-07-14T13:17:12+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=using_groups_to_set_up_a_sharing_workflow&rev=1752488232&do=diff Using Groups to set up a sharing workflow The 'Groups' tab on the sidebar allows you to create groups of users and manage access to the content you have created. With 'Groups' you can set up a workflow from a specific case collections and the users that have access to review the cases. text/html 2025-07-15T11:05:18+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=viewing_slides&rev=1752566718&do=diff Viewing Slides 1. Navigating to a Slide You can navigate slides already uploaded to the cloud and those stored on your local machine via the file tree on the left of the page (red box). Clicking on a folder in the file tree will display all the slides it contains in the main viewport. The file tree can be collapsed to free up more space to view your slides (1). You can choose to view your slides in gallery (2) and list (3) arrangements. text/html 2020-03-25T14:39:00+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=what_are_permalinks&rev=1585136340&do=diff What are permalinks? A permalink is the full URL you see (and use) for any given page, post or other pieces of content on a website. It’s a permanent link. A permalink could include your domain name (my.pathomation.com) plus what’s called a slug, the piece of the text/html 2025-07-14T09:14:38+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=what_is_a_collection_and_what_can_i_use_this_for&rev=1752473678&do=diff What is a collection and what can I use this for? A collection is a group of whole slide images that are gathered and treated as a single unit, because they share a common characteristic, purpose, or function. Another common name used in digital pathology for collections is Projects. Typical examples are: text/html 2020-03-25T14:00:43+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=what_is_an_app&rev=1585134043&do=diff What is an app? A mobile application or an app, is a computer program designed to run on a smartphone, tablet, smartwatch or other mobile devices. It's a piece of software that can run through a webbrowser. text/html 2026-03-13T14:49:42+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=what_is_pma.start&rev=1773402582&do=diff What is PMA.start PMA.start is a free desktop-based viewer and is part of the My Pathomation solution. PMA.start provides useful tools that support My Pathomation users. It offers a easy file transfer function between your pc and My Pathomation, both for uploading and downloading. text/html 2020-02-04T17:36:09+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=what_is_storage&rev=1580826969&do=diff What is storage? My Pathomation allows users to use My Pathomation as a cloud service to store their data in a remote network. text/html 2025-08-11T11:56:13+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=what_s_new&rev=1754902573&do=diff Release Notes Current release Build #3.0.2 Error occurred while sending invitations to users to join an organisation The bug was fixed and the invitation function was restored * Bug fix When selecting a free algorithm with zero credits on an account the algorithm did not start and displays a message that the credits are insufficient. text/html 2023-11-09T17:20:46+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=when_do_i_need_to_anonymize_data&rev=1699539646&do=diff When Do I Need to Anonymize WSI? A recurring question is how to make sure that images of human tissue you decide to use in My Pathomation are compliant with privacy regulations. These simple rules will help you decide when anonymization of identifiable information for whole slide images of human material becomes necessary. You can always ask advice to your Data Protection Officer. text/html 2026-03-23T13:23:58+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/my/doku.php?id=your_dashboard_landing_page_in_my_pathomation&rev=1774261438&do=diff Your Dashboard landing page in My Pathomation When you log in to you My Pathomation account you first see a 'My Dashboard' page grouping the key information of your My workspace or the organization you are logged in to. The dashboard: * has the name of the account you are logged in to, eg 'My workspace' or any of the organisations you have access to