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+ | ===== Importing Annotations to Training Sessions ===== | ||
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+ | Annotations are a valuable source of information for whole slide images.\\ | ||
+ | Not only can human-made annotations draw Users attention to specific parts of an image without needing someone to directly show it, but annotations are also frequently how AI analyses are exported and displayed. | ||
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+ | Thankfully, Pathotrainer is extremely adaptable when it comes to displaying your Annotations or making new ones. | ||
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+ | === Existing Annotations === | ||
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+ | If an image in a Case Collection has existing annotations, these will be detected and the option to toggle them on and off will appear automatically in the top right of the viewport in a training session. | ||
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+ | It doesn't matter if they are Third-Party (e.g. Halo, Visiopharm…) or made in Pathomation software, all detected annotations for that image in that folder will appear.\\ | ||
+ | You can also adjust the opacity of annotations using the slider bar underneath the name.\\ | ||
+ | Native annotations made using a Pathomation product e.g. PMA.studio, Pathotrainer will be listed as ‘NativeAnnotations’: | ||
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+ | {{ :annotation1.png?800 |}} | ||
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+ | Third Party annotations will recognized and toggleable by ‘brand name’ e.g. Aperio: | ||
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+ | {{ :annotation2.png?800 |}} | ||
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+ | Some types of annotations such as Visiopharm have multiple ‘classes’ of annotations which can be individually toggled on or off: | ||
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+ | {{ :annotation3.png?800 |}} | ||
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+ | ===What If I Don’t Already Have Annotations?=== | ||
+ | If you don’t already have annotations, you can make in your preferred Pathomation software such as PIMSLS, or in Pathotrainer directly.\\ | ||
+ | In Pathotrainer, when you are Creating a Case Collection or Editing an existing one, you can click on the image or the Annotations button for an image in a case to modify annotations: | ||
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+ | {{ :annotation4.png?800 |}} | ||
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+ | Clicking either will take you to the image configuration menu. | ||
+ | Here you will find a few tools: | ||
+ | - The image bar along the top which allows you to navigate between different images in a case | ||
+ | - The annotation toolbar which you can use to make your own annotations | ||
+ | - The image viewport where you can inspect and edit the image selected in (1) | ||
+ | - The existing annotations menu box where you can toggle on/off the visibility of existing annotations using the checkbox and adjust their opacity using the slider bar – please note this does NOT affect how they will appear in a training session to an end user – they will be able to toggle on/off the annotations and adjust the opacity themselves. | ||
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+ | {{ :annotation5.png?800 |}} | ||
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+ | When you are done editing your custom annotations, be sure to hit save. | ||
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+ | {{ :annotation6.png?800 |}} | ||
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+ | ===My Image Has Annotations But I Want To Hide Them For A Training Session=== | ||
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+ | Not a problem - in this case, we recommend duplicating the image to another folder using PMA.core / your storage management software of choice. Then using the duplicate in the case collection / training session. | ||
+ | Make sure you do not copy any third party annotation files with the image file. | ||