https://docs.pathomation.com/pathotrainer/ 2026-04-18T14:30:00+0300 https://docs.pathomation.com/pathotrainer/ https://docs.pathomation.com/pathotrainer/lib/tpl/dokuwiki/images/favicon.ico text/html 2025-11-25T17:38:08+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=accessing_the_system&rev=1764081488&do=diff Accessing the System In order to access PathoTrainer, you must log in using your credentials. Pathotrainer is a web application designed to operate efficiently using modern web browsers. It is fully functional whether accessed from a desktop workstation or a touch enabled tablet. text/html 2023-11-30T17:41:07+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=additional_material_and_links&rev=1701355267&do=diff Adding Additional Material and Links When editing a project the Additional material and Links tabs will allow you to add.... Additional material (i.e. non-WSIs) including videos or powerpoint presentations, and links to other websites. Additional Material Navigate to the 'Additional material' tab, and press add text/html 2025-11-17T12:41:28+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=as_a_user&rev=1763372488&do=diff User The User accounts have access to view Training Sessions they have been invited to. The User account has no access to the Content Management sidebar, meaning they aren't able setup new projects, create case collections, design data capture forms or setup sessions. text/html 2024-01-02T16:54:52+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=as_pathotrainer_admin&rev=1704203692&do=diff Administrator As an administrator, you have all the rights of Project Owners, with the additional rights of being able to manage users fully including removing and suspending accounts, and creating new users with any role, including Administrator. text/html 2023-09-22T15:13:03+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=as_pma.control_admin&rev=1695384783&do=diff Pathotrainer administrators have access to the system settings, system logs and some performance assessment tools. text/html 2025-11-26T15:33:38+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=assigning_a_participants_questionnaire_to_a_case_collection&rev=1764160418&do=diff Add a Participant Questionnaire to Your Training Session Now that you’ve created your questionnaire form specifically for this training session, the next step is to link it to the training session. * Open your training session and click on its name to go to the Edit page. text/html 2025-11-26T15:17:12+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=assigning_a_scoring_form_to_a_case_collection&rev=1764159432&do=diff Add a Scoring Form to Your Training Session Select the Project and Case Collection From the PathoTrainer homepage, choose the project that contains the case collection you want to add a scoring form to using the dropdown menu. Click on the desired case collection to open its edit page. text/html 2024-01-03T17:36:32+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=attributes&rev=1704292592&do=diff Attributes In the Attributes page of the System section of the administrators sidebar, you can view existing attributes that can be applied to a Training Session and quickly create new ones. To create a new one, simply click the “Create” button and write the name of the new attribute, e.g. Billable if you want to distinguish Training Sessions that are charged for vs ones given for free. text/html 2022-01-25T14:52:36+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=auto_scoring&rev=1643111556&do=diff Retrieving scoring results (automation) For data wrangling purposes, it is useful to automate the retrieve of a training session's scoring result. The formal syntax is: <https://server/pma.control/Training/UserScoreReportExcel/>{TRAINING_SESSION_ID}/type={REPORT_TYPE}&sessionID={PMA_CORE_SESSION_ID} For convenient parsing, we recommend setting REPORT_TYPE to 2 (CSV, computer-readable, de-normalized). text/html 2022-01-25T14:26:17+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=auto_version&rev=1643109977&do=diff Version retrieval (automation) For monitoring purposes, it is useful to determine the PMA.control version used through a back-end API call. All of Pathomation's platform components have this option, actually. In order to determine the installed version of PMA.control, you can issue the call: text/html 2025-11-25T18:24:54+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=automatic_content_progression&rev=1764084294&do=diff Automatic Content Progression Previously, it was possible to schedule Case Collections within a session to automatically become available to users based on time. New in PathoTrainer 2.2.0 is the ability to set episodic content release also by progression, ensuring that your participants don't rush ahead or skip out crucial training & assessment exercises. text/html 2020-07-17T11:39:55+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=case_collection_explorer&rev=1594975195&do=diff Case collection interaction page Selecting an available case collection in the session main page opens the case collection interaction page, the heart of PMA.control. The image below illustrates the main components of the interface, which may vary slightly depending on the current mode set by the session supervisor and the exact material available per session. text/html 2022-03-03T18:49:45+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=case_selection&rev=1646322585&do=diff Slide page The interface offers all the required components that enable you to switch between case collections, cases and slides. Selecting a case collection Use the drop down list on the top navigation bar to switch between the available case collections: text/html 2023-12-05T16:49:12+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=cases_and_case_collections&rev=1701784152&do=diff Adding Cases and Case Collections to a Project Case collections are how you organize your content to be shown in courses. Creating a case collection in a project You can create a Case Collection via the slides and images option in the sidebar of Pathotrainer and assign that case collection to a project during setup. text/html 2024-07-17T16:52:38+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=change_how_an_image_is_displayed_to_users&rev=1721224358&do=diff Changing the Starting View of an Image Shown to Users By default, when a User in Pathotrainer opens an image, they are presented with an overview of the slide at low magnification. But what if there are multiple core samples and you only want them to focus on one of them? ( text/html 2025-11-25T18:21:30+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=change_server_s&rev=1764084090&do=diff Change the Server of a Training Session Background: Why Should You Care About Server Placement Training Sessions are hosted on one or more servers depending on how many servers you rent from Pathomation around the globe. The server is the place where you and your participants connect to, stream the digital pathology images from, upload form data to, and more. text/html 2025-11-14T17:04:17+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=comment_fields_templates&rev=1763129057&do=diff Comment Fields In the Comment Fields Template page of the System section in the administrators sidebar, you can see existing templates or create new ones using the “Create” button in the upper right of the window. After clicking “Create” you can easily define the: text/html 2021-10-31T19:41:10+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=configure_project&rev=1635698470&do=diff What's in a project A project contains: - text/html 2025-11-25T17:53:33+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=course_mode&rev=1764082413&do=diff Course Mode Course Mode in PathoTrainer is designed to give you full control over how you create and deliver self-learning modules. It lets you structure content, add interactive material, and assess learners’ understanding — all in a way that matches your teaching style. With Course Mode, you can transform case collections, guidelines, and quizzes into a cohesive, engaging, and fully personalized learning experience. text/html 2021-10-11T12:00:26+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=create_a_case_collection&rev=1633942826&do=diff Besides creating a single case you can also create multiple cases from a list of WSIs in a directory. These are typically using search strings example: O\d+ all digits after the letter 'O' are used to define a case text/html 2023-11-30T15:36:17+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=create_a_project&rev=1701347777&do=diff Create A Project As a project owner you decide on the name, the content and the way participants/trainees can interact with the slides. First navigate to the Projects tab in the sidebar, and select “Create” In the Create New Project screen you can: text/html 2024-02-05T16:00:25+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=create_cases_and_case_collections&rev=1707138025&do=diff Creating Cases and Case Collections Case collections are how organize your content to be shown in courses. Navigating to the Slides and Images tab on the sidebar, and then selecting Case Collections will bring you to this tab. Here you can see an overview of existing case collections (if any) and can click the create button to add a new one. text/html 2024-02-29T18:04:45+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=creating_cases_using_pattern_search&rev=1709219085&do=diff Creating (Multiple) Cases with Pattern Search Sometimes you may need to create many Cases from WSIs that aren't in their own subfolder, or create a Case that has slides across several different folders, or find a large number of examples of a particular stain, indication, or filetype. text/html 2024-02-29T14:50:55+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=creating_multiple_cases&rev=1709207455&do=diff Creating Multiple Cases Case collections are the way to organize your WSIs to be shown in training sessions. Once you've made a Case Collection all the slides within it can quickly be added to as many training sessions as you like. When you have a lot of cases to add to a project or training session, adding them one by one can be tedious. text/html 2025-11-25T17:46:03+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=creating_users&rev=1764081963&do=diff Creating New Users on the PathoTrainer Starting from the Home Page in PathoTrainer, you will see on your left side the Users section. This is where you can manually add different users to the platform with any available role. When you are granted the Administrator role, you will have access to this section, so make sure your account has the correct permissions before continuing. text/html 2023-11-30T17:17:14+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=custom_annotation_tools&rev=1701353834&do=diff Custom Annotation Tools After selecting the Annotations toolbar tab when editing a project you will be able to define custom annotation tools. This is useful if you want all project users to use the same indications e.g. all macrophages are marked with blue freehand annotations, or if you want quick access to particular styles of annotation with fewer clicks. text/html 2025-11-24T17:29:36+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=custom_interaction_modes&rev=1763994576&do=diff Custom Interaction Modes On this page a trainer/supervisor can freely how some or all trainees can interact with the case collections. Changes to the interaction mode can be made by Supervisors per case collection(s) and per user(s) at any time before or during a training session, giving you the power to reveal, hide, and lock case collections and associated forms/consensus scores whenever you need to. text/html 2025-11-12T12:22:21+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=design_a_form&rev=1762939341&do=diff Designing a Form Forms are the way to collect data from your Users, whether it's an examination, gathering a consensus score for a case, or feedback on course content. Form Management To manage forms you will need to be an Administrator in PMA.core. Please ask your Administrator and / or Pathomation contact for more information. If you have the correct permissions you navigate to (1) in the sidebar. text/html 2023-11-30T17:21:27+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=edit_a_project&rev=1701354087&do=diff Edit A Project After hitting “Create” in the Create a Project menu, or navigating to an existing project by clicking on a project's name (1) or clicking “Edit” from the dropdown menu, you will be taken to the editing page. Here you have access to several tabs which allow you to: text/html 2025-11-20T14:55:28+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=edit_a_training_session&rev=1763639728&do=diff Edit Training Session In the Training Section page - accessible via the sidebar - you can view all existing training sessions see setup a session for how to create one. Clicking on 'Edit' will allow you to edit one. Once in the edit menu you will be able to: * Insert an image * View the associated project text/html 2024-01-03T15:48:37+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=home_page&rev=1704286117&do=diff Home page Upon successful log in you arrive on the Home Page. Here you can see: In this page you can select any of the available sessions to join. If you are registered to only one session, the system will automatically redirect you to the particular session's page. text/html 2024-01-03T13:51:11+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=home_page_supervisor&rev=1704279071&do=diff Homepage (Supervisor) Upon successful log in, you will see next to the list of sessions in which you have been registered as a user as well as the sessions in which you are registered as supervisor. In this page you can see Projects with sessions you can access (1) text/html 2025-11-14T19:43:45+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=how_to_add_metadata_to_your_cases&rev=1763138625&do=diff Comment Fields If you would like to add meaningful metadata to your cases during training sessions, PathoTrainer allows you to do this quickly using your own comment field templates. As a pathologist, you can structure this information exactly the way you prefer—whether it’s key histological features, clinical context, or teaching points you want to highlight. text/html 2025-11-14T18:30:11+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=importing_annotations_to_training_sessions&rev=1763134211&do=diff Importing Annotations to Training Sessions Annotations are a valuable source of information for whole slide images. Not only can human-made annotations draw Users attention to specific parts of an image without needing someone to directly show it, but annotations are also frequently how AI analyses are exported and displayed. text/html 2023-12-04T17:22:44+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=integrity_check&rev=1701699764&do=diff Integrity Check In the integrity check tab of a project you can see any training sessions you have created using this project, and if they are intact. If the images are no longer accessible due to being moved, deleted or renamed, you will be notified here. text/html 2025-11-19T17:50:25+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=interaction_modes&rev=1763563825&do=diff Interaction Modes with Case Collections There are different interaction modes which can be set per Case Collection during a training session. Users of a training session will only be able to see a Case Collection in the way designated by Project Owners/Supervisors. text/html 2020-07-28T12:20:26+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=interaction_page&rev=1595928026&do=diff Interaction page text/html 2020-07-28T12:27:35+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=interactiontest_page&rev=1595928455&do=diff test test text/html 2020-07-30T11:02:31+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=introduction&rev=1596096151&do=diff Introduction PMA.control is a dedicated tool for training, re-training, tuning and testing of histopathologic tests or scoring systems. PMA.control is intended for use at departments of pathology, universities and quality control organisations. It is intended for use by students and teachers in (bio-)medical science, histology, cytology and histopathology. text/html 2024-01-02T16:11:32+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=invite_participants&rev=1704201092&do=diff Invite Participants After you've setup a training session, it's time to add some particpants. This can be done in a two ways: You can create an entirely new user by hitting the Create User button (1) or select an existing user from the dropdown menu (2). Users can also be imported and exported using excel files, these buttons can be found next to (1). If you're looking to batch import a large number of users, we recommend performing a 'dummy' Export to Excel so that you have a template file … text/html 2020-09-25T18:40:00+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=keyboard_shortcuts&rev=1601048400&do=diff Keyboard shortcuts Via the information & help button, you can view the keyboard shortcuts available in the application: text/html 2024-02-02T16:20:56+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=live_mode&rev=1706880056&do=diff Live Mode As a Supervisor From time to time the trainer/supervisor of a session can take over control of your the viewport of all participants of the sessions. The trainer/supervisor will navigate through the cases and individual whole slide images. text/html 2024-02-02T16:24:01+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=live_mode_user&rev=1706880241&do=diff Live Mode As a Trainee From time to time the trainer/supervisor of a session can take over control of your the viewport of all participants of the sessions. The trainer/supervisor will navigate through the cases and individual whole slide images. text/html 2025-11-14T18:32:08+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=making_annotations_as_an_admin&rev=1763134328&do=diff Making System Annotations as an Admin You can make annotations that appear in all training sessions in PathoTrainer directly. When you are Creating a Case Collection or Editing an existing one, you can click on the image or the Annotations button for an image in a case to modify annotations: text/html 2024-02-16T12:45:40+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=navigating_the_slides&rev=1708076740&do=diff Navigating the slides Pathotrainer comes with the a digital slide viewer that maximizes performance and ease of use. Whether you are using a desktop workstation with a computer mouse or a touch enabled device, you will find out that it is straight forward and smooth to use. text/html 2020-08-18T12:07:23+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=navigation&rev=1597741643&do=diff Case selection The interface offers all the required components that enable you to switch between case collections, cases and slides. Selecting a case collection Use the drop down list on the top navigation bar to switch between the available case collections: text/html 2020-07-28T12:10:53+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=nieuwe_pagina&rev=1595927453&do=diff HOi test text/html 2024-01-02T17:27:41+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=observer&rev=1704205661&do=diff Observer Obvserver is a great role for foolproof monitoring. With this role, you can see everything that an administrator does with none of the responsibility. An account with this role can see everything, but cannot (accidentally) change any content or user settings. text/html 2020-06-05T15:35:33+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=overview&rev=1591360533&do=diff Overview PMA.control is a web application designed to operate efficiently using modern web browsers. It is fully functional whether accessed from a desktop workstation or a touch enabled tablet. Devices with smaller screen size, such as smartphones, are compatible but not recommended, due to the limited available screen real estate. text/html 2024-01-03T16:20:20+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=participant_management&rev=1704288020&do=diff Participant management On this page a trainer/supervisor can freely how some or all trainees can interact with the case collections. Changes to the interaction mode can be made by Supervisors per case collection(s) and per user(s) at any time before or during a training session, giving you the power to reveal, hide, and lock case collections and associated forms/consensus scores whenever you need to. text/html 2025-11-12T12:20:46+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=projectowner&rev=1762939246&do=diff Project Owners Project owners can configure projects, create case collections, assign data capture forms to their case collections, and invite participants to training sessions they own. However they cannot create new accounts with Project Owner, Supervisor or Administrator roles, manage users outside of the context of their own projects, or suspend accounts. text/html 2025-11-27T11:12:28+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=quick-start_guide&rev=1764231148&do=diff Quick Start This quick-start guide is inteded to point you in the right direction to create a basic virtual classroom environment in PathoTrainer in which your Trainees will be able to view cases and input data. This guide assumes that you have an administrator level account. text/html 2024-02-29T14:50:12+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=quickly_creating_subfolders_for_multiple_cases&rev=1709207412&do=diff Quickly Creating Subfolders for Adding Multiple Cases Case collections are the way to organize your WSIs to be shown in training sessions. Once you've made a Case Collection all the slides within it can quickly be added to as many training sessions as you like. text/html 2020-09-25T18:39:23+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=reference_images&rev=1601048363&do=diff Reference images If available, you can open the reference images browser by clicking the respective button: To close the reference image browser you can either click the X button of the window or click again the reference images toggle. text/html 2024-01-03T17:21:50+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=regions&rev=1704291710&do=diff Regions In the Regions page of the System section of the administrators toolbar, you will see your servers and geo-replication instances. In this table you can see * The name of your instance * Where it is located * The web address of your PMA.core text/html 2024-01-03T17:33:34+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=registration_terms&rev=1704292414&do=diff Registration Terms In the Registration Terms page of the System section of the administrators toolbar, you can view and make edits to the Registration Terms that new users will be presented with to accept upon registering with your instance of the Pathotrainer text/html 2025-11-14T16:59:14+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=release_notes&rev=1763128754&do=diff What's new in version 2.2.0? Pathotrainer 2.2.0 is a release of the PathoTrainer codebase. It is a minor release that contains several new features helpful for multi-stage training programs, extracting actionable information from global evaluation programs, and reducing the admin burden for these. text/html 2025-11-26T18:05:10+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=reveal_expert_annotations&rev=1764169510&do=diff Revealing Annotations Prior to August 2025 it was possible to give immediate feedback to independent learners completing cases in the Self-Test interaction mode in the form of the correct diagnosis and additional text comments. With the release of PathoTrainer 2.1.0, it is now possible to also guide your students with on-slide drawn annotations that reveal themselves upon score submission text/html 2025-11-26T15:29:40+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=review_student_annotations&rev=1764160180&do=diff Review Student Annotations as a Supervisor PathoTrainer provides a flexible annotation system that supports the full lifecycle of working with digital slides. User/Trainee Test Active Interaction Mode is designed for trainees who need to actively practice. In this mode, users can load cases with existing annotations, create new annotations, and interact with the image as if they were performing a real diagnostic task. This mode focuses on learning by doing: trainees explore the case, mark re… text/html 2020-09-25T18:39:41+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=scoring_cases&rev=1601048381&do=diff Scoring cases If test active mode has been enabled for you by the supervisors, you can score each case of a case collection by filling in the form fields. Sometimes you might need to scroll down to the bottom of the right column, below the slide list to view the form: text/html 2024-01-03T15:57:02+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=session_main_page&rev=1704286622&do=diff Session page Once you join a session, the system takes you to the session menu. On this page you will find all material related to the session. The exact layout of a session may vary depending on the configuration, with more or less options in each section. text/html 2024-01-03T13:50:26+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=session_main_page_supervisor&rev=1704279026&do=diff Session page (Project Owner and Supervisor) General Overview Once you join a session, you will have access to the available case collections as well as all supplemental material related to the session. The exact layout of a session may vary depending on the configuration. A typical setup is illustrated below. text/html 2025-11-20T13:40:56+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=setup_a_session&rev=1763635256&do=diff Setting Up a Session Previously if you wanted to work with slides for a biomarker training or consensus scoring you'd need a full briefcase with exemplar slides for all your participants per indication/biomarker, forms, case information... and that's before you even begin to consider the microscopes! text/html 2024-02-05T15:40:09+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=sharing_content&rev=1707136809&do=diff Sharing Content of a Training Session Depending on how a Training Session is configured, you may be able to share WSI content from a session with other people, whether they are Pathotrainer users or not, using just a link. The share can be password protected, and have an expiration date. text/html 2025-11-26T15:14:18+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=sidebar&rev=1764159258&do=diff About Pathotrainer * Introduction * Quick-start guide * What's new * Release Notes User Management * Creating users * User Types * Trainees vs Supervisors Using Training Sessions Basics * Access and login * Navigating a slide * Switching between slides * Reference images * Scoring cases * Keyboard shortcuts * Interaction modes Training Sessions for Trainees * Home page * Session page * Live mode Training Sessions for Supervisors * Home page * Sessi… text/html 2023-12-01T19:02:43+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=slide_inventory&rev=1701446563&do=diff Slide Inventory Navigating to Slides and Images in the sidebar and selecting the Inventory tab will open the treeview of available sources of slides i.e. from the PMA.core instances you have linked to Pathotrainer From here you can navigate folders and view the slides and images you have available, both by hovering your cursor over image files to see a thumbnail and by clicking on an image to open the larger viewer text/html 2024-01-03T17:31:59+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=speed_test&rev=1704292319&do=diff Speed Test In the Speed Test page of the System section of the administrators toolbar, you can run and view the results of a Speed Test between your current location and the server/geo-replicated instance(s) you have. N.B. We recommend disabling your VPN if you have one, both for running Speed Tests and for using the Pathotrainer in general, as VPNs often drastically reduce performance with lower download and upload speeds, and in some cases actively throttle these. text/html 2023-09-22T15:24:05+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=speedtest&rev=1695385445&do=diff Test your connection If you experience performance problems like freezing, slow loading of the pages and the slides, tabs not opening, glitches, browser crashing, Pathotrainer provides you with a onboard troubleshooting tool to test your connection in the tab 'speedtest'. text/html 2025-11-14T18:17:11+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=start&rev=1763133431&do=diff What is the PathoTrainer ? The PathoTrainer is a dedicated tool for creating virtual spaces in which digital pathology education, data collection, and testing of pathologists with or without AI support are all facilitated. PathoTrainer has two major components: text/html 2024-01-02T16:34:51+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=supervisor-trainer&rev=1704202491&do=diff Supervisor As a trainer-supervisor you are a super-user in a session. You will be able to change the way the participants will see the slides. Depending on the predefined interaction modes participants will be able to see slides with empty dataforms or complete score overviews. text/html 2024-01-03T17:21:38+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=system_logs&rev=1704291698&do=diff System Logs In the System Logs page of the System section of the administrators toolbar, you can see a list of errors that have been triggered. Here you can see: * Host name * Error code * Type * Error description * User that triggered the error text/html 2024-02-07T09:57:55+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=system_requirements&rev=1707289075&do=diff System requirements Overview During development our software is continuously tested on the Microsoft Windows Operating System using the following browsers: Internet Explorer 10+ and the latest versions of Google Chrome, Safari and Firefox. As a rule of thumb, if you're running an up-to-date browser, you should be able to run our software. text/html 2024-01-03T17:13:37+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=system_settings&rev=1704291217&do=diff System Settings On this page you can configure the landing page and the home page. * Brand name * Email help address * Logo * Allow user registration option * Password recovery option * Welcome message on home page * Item which filetypes are allowed in a project, welcome message, logo and the brand name on the landing page, email contact address, logo and automated password generation. text/html 2023-09-22T15:25:00+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=terminology&rev=1695385500&do=diff Terminology and glossary As with any technology, there are lots of terms we toss around to explain things. Just understanding what each term means can be half the battle. Whether you are entirely new to Pathotrainer or have been using it for years, there are always new terms to learn. The fact that we use common English words for many capabilities can add an additional layer of confusion. text/html 2020-08-18T12:16:30+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=the_viewer&rev=1597742190&do=diff Navigation the slides PMA.control offers an efficient digital slide viewer that maximizes performance and ease of use. Whether you are using a desktop workstation with a computer mouse or a touch enabled device, you will find out that it is straight forward and smooth to use. text/html 2025-11-18T18:39:32+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=trainees_vs_supervisors&rev=1763480372&do=diff Trainees vs Supervisors Training Sessions are made by Content Creator account types Admin/Project Owner. Once a Training Session is created, Admin/Project Owners can invite user accounts as Participants to Training Sessions as either a Trainee or a Supervisor. text/html 2025-11-25T17:50:50+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=uploading_slides&rev=1764082250&do=diff Uploading of Slides in PathoTrainer Before you can start to make your cases for your training session, it is necessary to upload the slides to your PathoTrainer platform. In this video, we will show you how to do this step by step. How to Upload Your Own Slides text/html 2025-11-18T18:38:46+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=user_types&rev=1763480326&do=diff User Types & Roles There are four User Account types in PathoTrainer: * User - standard participant account. Joins Training Sessions, no content creation rights. * Project Owner - Content Creator Account, can only see own Projects * Administrator text/html 2024-01-03T17:26:53+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=viewer_settings&rev=1704292013&do=diff Viewer Settings In the Viewer Settings page of the System section of the administrators toolbar, you can switch between the different styles of viewport for viewing slides using the dropdown menu. text/html 2025-11-26T18:33:57+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=viewing_results&rev=1764171237&do=diff Reviewing Score Results After you've collected data from your participants, you need to be able to review their submitted scores and see their scores. PathoTrainer will automatically grade participants if your consensus / ground truth data is already available, and you can view these results in several ways: text/html 2021-10-31T20:41:33+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=what_is_a_session&rev=1635702093&do=diff Let’s break down the components to setting up a session. They are summarized below. * select the case collections and data forms that will be used * edit the session page that all the participants will see * decide whether you will send email invitations text/html 2020-09-25T19:31:05+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=what_is_the_content_of_a_project&rev=1601051465&do=diff What is the content of project ? - - - To setup up project for a histopathologic tests or scoring systems; you will need to built your case collections that you can use for reference, teaching or testing purposes. You will also have to option to create data capture scoring forms, add interpretation guide, questionnaires and other valuable material. text/html 2025-11-14T17:03:12+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=what_s_new&rev=1763128992&do=diff What's new in version 2.2.0? Pathotrainer 2.2.0 is a release of the PathoTrainer codebase. It is a minor release that contains several new features helpful for multi-stage training programs, extracting actionable information from global evaluation programs, and reducing the admin burden for these. text/html 2020-07-29T16:36:54+0300 Anonymous (anonymous@undisclosed.example.com) https://docs.pathomation.com/pathotrainer/doku.php?id=who_should_read_this&rev=1596029814&do=diff Who should read this ? This document is targeted to trainees, instructors, pathologists, scientists as well as administrators of the platform.