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pmann [2023/01/16 17:19] angelos [The Pathomation ANNotation interface] |
pmann [2023/01/16 17:20] angelos [The Pathomation ANNotation interface] |
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* Indica Labs .annotations | * Indica Labs .annotations | ||
* Aperio .xml | * Aperio .xml | ||
- | * Images (TIFF, PNG or even whole slide images) | + | * Images (TIFF, PNG or even other whole slide images) |
To associate external files with a slide you have to use the API call [[https://docs.pathomation.com/pma.core.api/#/Api/Slide_SetExternalAnnotationFiles|SetExternalAnnotationFiles]]. This takes an array of tuples containing the //Name// and //Path// for each associated 3rd party annotations file. For //Name// you can use any text to differentiate from other annotations an the //Path// needs to be a //virtual path// to the file containing the annotations. | To associate external files with a slide you have to use the API call [[https://docs.pathomation.com/pma.core.api/#/Api/Slide_SetExternalAnnotationFiles|SetExternalAnnotationFiles]]. This takes an array of tuples containing the //Name// and //Path// for each associated 3rd party annotations file. For //Name// you can use any text to differentiate from other annotations an the //Path// needs to be a //virtual path// to the file containing the annotations. | ||
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**Note for image overlays:** | **Note for image overlays:** | ||
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When using an image as an annotation layer, PMA.core assumes that the aspect ratio of the overlay and the whole slide image are exactly the same. | When using an image as an annotation layer, PMA.core assumes that the aspect ratio of the overlay and the whole slide image are exactly the same. | ||