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viewport [2022/02/07 19:32]
yves [Zooming in]
viewport [2022/02/07 19:51]
yves [Z-stacked content]
Line 30: Line 30:
 ==== Zooming in ==== ==== Zooming in ====
  
-PMA.UI'​s viewport offers ​diffent ​ways to zoom in on a slide.+PMA.UI'​s viewport offers ​different ​ways to zoom in on a slide.
  
 The simplest way is to use the scrollwheel on your mouse: pushing the scrollwheel forward (away from you) lets your zoom in; bringing it toward you (or scrolling //​backwards//​) zoom out again. Furthermore,​ we've optimized the speed of interaction so that you can go from the highest level of viewing to the deepest level in one smooth sweeping motion. The simplest way is to use the scrollwheel on your mouse: pushing the scrollwheel forward (away from you) lets your zoom in; bringing it toward you (or scrolling //​backwards//​) zoom out again. Furthermore,​ we've optimized the speed of interaction so that you can go from the highest level of viewing to the deepest level in one smooth sweeping motion.
Line 67: Line 67:
 Use it to control brightness, contrast, and gamma correction. Use it to control brightness, contrast, and gamma correction.
 ==== Fluorescent content ==== ==== Fluorescent content ====
 +
 +When your slide contains one or more fluorescent color channels, a separate widget appears in the left-hand side of the viewport to allow controls over there.
 +
 +{{ ::​fluo1.png?​direct&​400 |}}
 +
 +Names of channels are copied from the original file format, where possible. ​
 +
 +You can control the visibility range of each channel individually through the scrollbar underneath each channel.
 +
 +{{ ::​fluo2.png?​direct&​400 |}}
 +
 +Color ranges are supported both in 8 bit and 16 bit. Version 2.0.0 only supports 8 bit channels, which sometimes lead to color bleading. This was resolved in [[what_s_new_in_version_2.0.1|version 2.0.1]] and higher.
 +
  
 ==== Z-stacked content ==== ==== Z-stacked content ====
  
 +Similar to fluorescent slides; when a slide turns out to contain mutliple planes / stacks, a new widget appears automatically in the left-hand side of the viewport, allowing the end-user to navigate through the various layers.
 +
 +{{ ::​viewport_zstack.png?​direct&​200 |}}
  
 +We have a [[https://​realdata.pathomation.com/​blur-detection-in-z-stacks/​|blog article on how you can analyze a z-stack]] to artifically compose a new slide that contains the sharpest tile at each position from the slide.
viewport.txt ยท Last modified: 2022/02/07 20:00 by yves