https://docs.pathomation.com/pma.core/3.0.1/ 2026-04-18T12:38:38+0300 https://docs.pathomation.com/pma.core/3.0.1/ https://docs.pathomation.com/pma.core/3.0.1/lib/tpl/dokuwiki/images/favicon.ico text/html 2026-03-10T11:44:18+0300 mehdi (mehdi@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?id=ifu&rev=1773132258&do=diff Instructions For Use (IFU) To view the IFU document which is provided as a PDF, you need a PDF viewer such as Adobe Acrobat Reader. The program can be downloaded free of charge via https://get2.adobe.com/reader. Download the IFU documentation: https://docs.pathomation.com/ifu/pma.core/3.0 text/html 2023-05-08T11:50:01+0300 alex (alex@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?id=release_history&rev=1683535801&do=diff Release history Version Revision Released PMA.UI version Documentation PMA.core 3.0.1 (current version) be720dc8 November 2022 2.21.0 PMA.core 3.0.0 f47dcd30 May 2022 2.21.0 Wiki PMA.core 2.0.2 2081 March 2022 Wiki PMA.core 2.0.1 2069 February 2022 Wiki PMA.core 2.0.0 1803 January 2021 text/html 2023-03-20T15:27:14+0300 yves (yves@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?id=forms&rev=1679315234&do=diff Forms See form_management. text/html 2023-01-23T11:11:46+0300 angelos (angelos@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?id=what_s_new_in_version_3.0.1&rev=1674461506&do=diff What's new in version 3.0.1? PMA.core 3.0.1 is commit (be720dc8) of the PMA.core codebase. It follows PMA.core 3.0.0 (f47dcd301e). It is not a major revision, with small refinements and bug fixes. General improvements * DeleteDirectory API method now supports deleting recursively files, folders and subfolders text/html 2023-01-17T17:03:43+0300 yves (yves@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?id=supported_file_formats&rev=1673964223&do=diff Whole slide images and virtual slides PMA.core supports a variety of image capturing techniques and modalities. A full list of currently supported formats is available from our website at https://www.pathomation.com/formats. You can read more about our philosophy regarding the support of vendor-specific file format text/html 2023-01-17T17:02:41+0300 yves (yves@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?id=fluo&rev=1673964161&do=diff Fluorescent data PMA.core supports various fluorescent file formats. To get a list of most recent supported formats, have a look at <https://www.pathomation.com/formats>. Histogram clipping The software offers the option to clip a fluorescent channel within a range of intensity values (min/max). In other software, this range is typically set to the pixel depth of the image (8, 16 bits etc.). Other times it is set to the actual min & max values within the pixel data of the image. Our approac… text/html 2023-01-17T17:00:32+0300 yves (yves@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?image=histogram_clipping.png&ns=&rev=1673964032&tab_details=history&mediado=diff&do=media <img src="https://docs.pathomation.com/pma.core/3.0.1/lib/exe/fetch.php?w=500&h=307&t=1673964032&amp;tok=a6755c&amp;media=histogram_clipping.png" alt="histogram_clipping.png" /> text/html 2023-01-16T17:22:03+0300 angelos (angelos@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?id=pmann&rev=1673878923&do=diff The Pathomation ANNotation interface PMANN is a part of the Pathomation back-end API that makes it easy to handle heterogeneous (external) annotations. PMA.core can leverage the use of PMANN via the External Files interface and the associated API calls. These API calls associate a number of files containing any known 3rd party annotations with a slide. PMA.core supports 3rd party annotations from the following vendors Visiopharm, Indica Labs and Aperio. Each of these formats are supported via… text/html 2023-01-13T13:01:59+0300 yves (yves@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?id=barcode&rev=1673604119&do=diff Barcodes Microscope slides have labels. In many instances, these slides have barcodes printed on them. In complex scenarios, a single label can even have multiple barcodes. These barcodes are available in several different industry-standard formats. Through the technique of Optical Character Recognition ( text/html 2023-01-13T13:00:41+0300 yves (yves@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?id=nonapi&rev=1673604041&do=diff Image Endpoints The following endpoints are available in PMA.core to view Whole Slide Images and its associated labels, thumbnails and macro images. The following list contains the endpoint URL, a brief description and the available parameters for each one. text/html 2023-01-13T12:48:22+0300 yves (yves@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?image=slide_representation.png&ns=&rev=1673603302&tab_details=history&mediado=diff&do=media <img src="https://docs.pathomation.com/pma.core/3.0.1/lib/exe/fetch.php?w=500&h=190&t=1673603302&amp;tok=fe7473&amp;media=slide_representation.png" alt="slide_representation.png" /> text/html 2022-12-27T13:58:31+0300 mehdi (mehdi@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?image=root_dir_load_error.png&ns=&rev=1672138711&tab_details=history&mediado=diff&do=media <img src="https://docs.pathomation.com/pma.core/3.0.1/lib/exe/fetch.php?w=488&h=362&t=1672138711&amp;tok=112864&amp;media=root_dir_load_error.png" alt="root_dir_load_error.png" /> text/html 2022-11-22T12:46:03+0300 yves (yves@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?image=show_hidden_files.png&ns=&rev=1669110363&tab_details=history&mediado=diff&do=media <img src="https://docs.pathomation.com/pma.core/3.0.1/lib/exe/fetch.php?w=500&h=379&t=1669110363&amp;tok=3cc6b1&amp;media=show_hidden_files.png" alt="show_hidden_files.png" /> text/html 2022-11-22T12:22:39+0300 yves (yves@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?image=ge_omnyx.png&ns=&rev=1669108959&tab_details=history&mediado=diff&do=media <img src="https://docs.pathomation.com/pma.core/3.0.1/lib/exe/fetch.php?w=479&h=259&t=1669108959&amp;tok=7d0dfb&amp;media=ge_omnyx.png" alt="ge_omnyx.png" /> text/html 2022-10-07T10:14:09+0300 yves (yves@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?image=2022-10-07_09_12_57-edit_root_directory_-_pma.core.png&ns=&rev=1665126849&tab_details=history&mediado=diff&do=media <img src="https://docs.pathomation.com/pma.core/3.0.1/lib/exe/fetch.php?w=397&h=240&t=1665126849&amp;tok=582c6f&amp;media=2022-10-07_09_12_57-edit_root_directory_-_pma.core.png" alt="2022-10-07_09_12_57-edit_root_directory_-_pma.core.png" /> text/html 2022-10-07T10:04:03+0300 yves (yves@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?image=2022-10-07_09_01_18-advanced_viewport_configuration_-_pma.ui_examples_2.25.2.jpg&ns=&rev=1665126243&tab_details=history&mediado=diff&do=media <img src="https://docs.pathomation.com/pma.core/3.0.1/lib/exe/fetch.php?w=500&h=280&t=1665126243&amp;tok=0baec0&amp;media=2022-10-07_09_01_18-advanced_viewport_configuration_-_pma.ui_examples_2.25.2.jpg" alt="2022-10-07_09_01_18-advanced_viewport_configuration_-_pma.ui_examples_2.25.2.jpg" /> text/html 2022-10-07T10:03:06+0300 yves (yves@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?image=2022-10-07_09_01_18-advanced_viewport_configuration_-_pma.ui_examples_2.25.2.png&ns=&rev=1665126186&tab_details=history&mediado=diff&do=media <img src="https://docs.pathomation.com/pma.core/3.0.1/lib/exe/fetch.php?w=500&h=280&t=1665126186&amp;tok=106abe&amp;media=2022-10-07_09_01_18-advanced_viewport_configuration_-_pma.ui_examples_2.25.2.png" alt="2022-10-07_09_01_18-advanced_viewport_configuration_-_pma.ui_examples_2.25.2.png" /> text/html 2022-09-29T17:08:02+0300 yves (yves@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?image=format_macro_gross.png&ns=&rev=1664460482&tab_details=history&mediado=diff&do=media <img src="https://docs.pathomation.com/pma.core/3.0.1/lib/exe/fetch.php?w=500&h=350&t=1664460482&amp;tok=f88907&amp;media=format_macro_gross.png" alt="format_macro_gross.png" /> text/html 2022-09-21T15:09:25+0300 antreas (antreas@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?image=prevent_rendering_of_labels.jpg&ns=&rev=1663762165&tab_details=history&mediado=diff&do=media <img src="https://docs.pathomation.com/pma.core/3.0.1/lib/exe/fetch.php?w=500&h=156&t=1663762165&amp;tok=206e3f&amp;media=prevent_rendering_of_labels.jpg" alt="prevent_rendering_of_labels.jpg" /> text/html 2022-09-06T16:34:18+0300 antreas (antreas@undisclosed.example.com) https://docs.pathomation.com/pma.core/3.0.1/doku.php?image=azure_lake_new.jpg&ns=&rev=1662471258&tab_details=history&mediado=diff&do=media <img src="https://docs.pathomation.com/pma.core/3.0.1/lib/exe/fetch.php?w=346&h=272&t=1662471258&amp;tok=a85415&amp;media=azure_lake_new.jpg" alt="azure_lake_new.jpg" />