nonapi
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nonapi [2022/09/06 17:58] antreas |
nonapi [2024/06/10 11:57] (current) angelos |
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| ===== Image Endpoints ===== | ===== Image Endpoints ===== | ||
| - | The following endpoints are available in PMA.core to view Whole Slide Images and its associated labels, thumbnails and macro images. The following list contains the endpoint URL, a brief description and the available parameters for each one. | + | The following endpoints are available in PMA.core to view Whole Slide Images and their associated labels, thumbnails and macro images. The following list contains the endpoint URL, a brief description and the available parameters for each one. |
| ==== Tile ==== | ==== Tile ==== | ||
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| |**channels**|Comma separated channel indexes to render| | |**channels**|Comma separated channel indexes to render| | ||
| |**channelClipping**|Min and max limits to clip and scale pixel values. Two values required per channel| | |**channelClipping**|Min and max limits to clip and scale pixel values. Two values required per channel| | ||
| + | |**channelColor**|Comma separated hex AARRGGBB color per fluorescent channel| | ||
| |**gamma**|Gamma values for each channel. One value required per channel| | |**gamma**|Gamma values for each channel. One value required per channel| | ||
| |**x**|The x index of the tile| | |**x**|The x index of the tile| | ||
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| |**z**|The z index of the tile| | |**z**|The z index of the tile| | ||
| |cache|//Optional// parameter that tells the renderer whether or not to use the cache to fetch the tile| | |cache|//Optional// parameter that tells the renderer whether or not to use the cache to fetch the tile| | ||
| - | |format|//Optional// resulting image format. Valid values are JPG, JPEG and PNG| | + | |format|//Optional// resulting image format. Valid values are JPG, JPEG, PNG, TIFF and DICOM| |
| |quality|//Optional// quality parameter used only for the jpeg format| | |quality|//Optional// quality parameter used only for the jpeg format| | ||
| |postGamma|//Optional// gamma value to apply as post processing| | |postGamma|//Optional// gamma value to apply as post processing| | ||
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| **/region** Renders a region of a slide | **/region** Renders a region of a slide | ||
| ^Parameter ^Description^ | ^Parameter ^Description^ | ||
| - | |**sessionID**|The session id to authenticate with| | + | |**sessionID**|The session ID to authenticate with| |
| |**pathOrUid**|The path or unique identifier of the image to render| | |**pathOrUid**|The path or unique identifier of the image to render| | ||
| |**timeframe**|The index of the time frame to render| | |**timeframe**|The index of the time frame to render| | ||
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| |**scale**|The factor to scale the rendered region by| | |**scale**|The factor to scale the rendered region by| | ||
| |**channelClipping**|Min and max limits to clip and scale pixel values. Two values required per channel.| | |**channelClipping**|Min and max limits to clip and scale pixel values. Two values required per channel.| | ||
| + | |**channelColor**|Comma separated hex AARRGGBB color per fluorescent channel| | ||
| |**gamma**|Gamma values for each channel. One value required per channel | | |**gamma**|Gamma values for each channel. One value required per channel | | ||
| |drawScaleBar|//Optional// Draw an accurate scale bar| | |drawScaleBar|//Optional// Draw an accurate scale bar| | ||
| |downloadInsteadOfDisplay|//Optional// Whether or not to download the image or display it in the browser| | |downloadInsteadOfDisplay|//Optional// Whether or not to download the image or display it in the browser| | ||
| |drawFilename|//Optional// 0 do not draw, 1 draw filename on top, 2 draw on bottom| | |drawFilename|//Optional// 0 do not draw, 1 draw filename on top, 2 draw on bottom| | ||
| - | |format|//Optional// parameter representing the resulting image format. Valid values are JPG, JPEG and PNG| | + | |format|//Optional// parameter representing the resulting image format. JPG, JPEG, PNG, TIFF and DICOM| |
| |quality|//Optional// quality parameter used only for the jpeg format| | |quality|//Optional// quality parameter used only for the jpeg format| | ||
| - | |annotationsLayerType|A comma separated list of extra annotations layer to render| | + | |annotationsLayerType|//Optional// A comma separated list of extra annotations layer to render| |
| - | |rotation|Rotation angle in degrees| | + | |rotation|//Optional// Rotation angle in degrees| |
| - | |flipHorizontal|Whether to flip region horizontally| | + | |flipHorizontal|//Optional// Whether to flip region horizontally| |
| - | |flipVertical|Whether to flip the region vertically| | + | |flipVertical|//Optional// Whether to flip the region vertically| |
| |dpi|//Optional// dpi to resolution for the exported image| | |dpi|//Optional// dpi to resolution for the exported image| | ||
| |postGamma|//Optional// gamma value to apply as post processing| | |postGamma|//Optional// gamma value to apply as post processing| | ||
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| **Returns** A file stream that contains the rendered region | **Returns** A file stream that contains the rendered region | ||
| - | **Example** ///region?sessionId=%%sessionId%%&pathOrUid=%%path%%&timeframe=0&layer=0&channels=0&channelClipping=0,0&gamma=1&x=0&y=0&width=1000&height=1000// | + | **Example** ///region?sessionId=%%sessionId%%&pathOrUid=%%path%%&timeframe=0&layer=0&channels=0&channelClipping=0,0&channelColor=ffffffff&gamma=1&x=0&y=0&width=1000&height=1000&scale=0.1// |
| + | In the example request above, the system will render a 1000x1000 pixel portion of the full resolution image and scale it to 100x100 pixels before it returns it to the client. | ||
| ==== Thumbnail ==== | ==== Thumbnail ==== | ||
| **/thumbnail** Renders the associated thumbnail of slide | **/thumbnail** Renders the associated thumbnail of slide | ||
| ^Parameter ^Description^ | ^Parameter ^Description^ | ||
| - | |**sessionID**|The session id to authenticate with| | + | |**sessionID**|The session ID to authenticate with| |
| |**pathOrUid**|The path or unique identifier of the image to render| | |**pathOrUid**|The path or unique identifier of the image to render| | ||
| |orientation|//Optional// The orientation of the thumbnail (0 = auto; 1 = vertical; 2 = horizontal)| | |orientation|//Optional// The orientation of the thumbnail (0 = auto; 1 = vertical; 2 = horizontal)| | ||
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| ^Parameter ^Description^ | ^Parameter ^Description^ | ||
| - | |**sessionID**|The session id to authenticate with| | + | |**sessionID**|The session ID to authenticate with| |
| |**pathOrUid**|The path or unique identifier of the image to render| | |**pathOrUid**|The path or unique identifier of the image to render| | ||
| |orientation|//Optional// The orientation of the macro (0 = auto; 1 = vertical; 2 = horizontal)| | |orientation|//Optional// The orientation of the macro (0 = auto; 1 = vertical; 2 = horizontal)| | ||
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| ==== Barcode ==== | ==== Barcode ==== | ||
| - | **/barcode** Renders the associated barcode of a slide | + | **/barcode** Renders the associated [[barcode|barcode]] of a slide |
| ^Parameter ^Description^ | ^Parameter ^Description^ | ||
| - | |**sessionID**|The session id to authenticate with| | + | |**sessionID**|The session ID to authenticate with| |
| |**pathOrUid**|The path or unique identifier of the image to render| | |**pathOrUid**|The path or unique identifier of the image to render| | ||
| |orientation|//Optional// The orientation of the barcode (0 = auto; 1 = vertical; 2 = horizontal)| | |orientation|//Optional// The orientation of the barcode (0 = auto; 1 = vertical; 2 = horizontal)| | ||
nonapi.1662476307.txt.gz · Last modified: 2022/09/06 17:58 by antreas
