PMA.core 3.0.7

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pmann [2022/10/13 09:44] – yvespmann [2023/01/16 15:22] (current) – [The Pathomation ANNotation interface] angelos
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   * Indica Labs .annotations   * Indica Labs .annotations
   * Aperio .xml   * Aperio .xml
 +  * Images (TIFF, PNG or even other whole slide images)
  
 To associate external files with a slide you have to use the API call [[https://docs.pathomation.com/pma.core.api/#/Api/Slide_SetExternalAnnotationFiles|SetExternalAnnotationFiles]]. This takes an array of tuples containing the //Name// and //Path// for each associated 3rd party annotations file. For //Name// you can use any text to differentiate from other annotations an the //Path// needs to be a //virtual path// to the file containing the annotations.  To associate external files with a slide you have to use the API call [[https://docs.pathomation.com/pma.core.api/#/Api/Slide_SetExternalAnnotationFiles|SetExternalAnnotationFiles]]. This takes an array of tuples containing the //Name// and //Path// for each associated 3rd party annotations file. For //Name// you can use any text to differentiate from other annotations an the //Path// needs to be a //virtual path// to the file containing the annotations. 
 You can get the previously set external annotations files for a slide via the [[https://docs.pathomation.com/pma.core.api/#/Api/Slide_GetExternalAnnotationFiles|GetExternalAnnotationFiles]] API call, which returns the array of //Name/Path// tuples for each file associated with any slide You can get the previously set external annotations files for a slide via the [[https://docs.pathomation.com/pma.core.api/#/Api/Slide_GetExternalAnnotationFiles|GetExternalAnnotationFiles]] API call, which returns the array of //Name/Path// tuples for each file associated with any slide
 +
 +**Notes for image overlays:**
 +
 +  * Image overlays should have transparency otherwise they will completely hide the whole slide image. Image formats that support alpha channel are PNG and certain TIFF configurations.
 +  * When using an image as an annotation layer, PMA.core assumes that the aspect ratio of the overlay and the whole slide image are exactly the same.
  
 ==== Example ==== ==== Example ====
pmann.1665647068.txt.gz · Last modified: by yves
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