PMA.core 3

PMA.core 2.0.1 is revision 2069 of the PMA.core codebase. It follows PMA.core 2.0.0 (revision 1803). It is a minor revision, with small refinements and bugfixes.

• Support for Bionavation SVS slides
• Support for JPEG 2000 Optrascan slides
• Improved SVS resolution parsing
• Zoomify file format is better handled (GetFilenames() method)
• Improved handling of Philips iSyntax slides (IO stream context switching; caching)
• KFBio rendering issues resolved
• Improved handling of Olympus Webview file format
• Improved handling of Olympus VSI file format (support for TransmissionOverlay channel)
• Zeiss CZI file format handling is improved (now also includes mask support)
• 3DHistech MRXS slide content is improved
• Huron Z-stacks are handled properly now
• Added support for Motic MDSX file format
• Barcode label cutoffs are interpreted correctly for Hamamatsu NDPI slides
• Added nominal magnification metadata for Zeiss CZI and Leica SCN slides
• For Zeiss CZI slides, also report back Camera, Objectives, and Detector instruments
• Fixed Microsoft DeepZoom DZI rounding errors
• Added ExposureTime, EmissionWaveLength for Olympus VSI slides to ImageInfo dictionary
• Better handling of OME TIFF slides
• Better support for fluorescent SCN files
• Added Olympus OIR file format
• Added OME Zarr file format
• Improved support for TIFP-less Ventana BIF slides

• better support for OAuth authentication (including at the API level)
• Authenticate() API method now supports POST
• updated PMA.UI version to 2.16.0
• File filtering is faster now
• Audit trail information is easier accessible and better presented
• Enriched ImageInfo dictionaries
• Improved GetRootDirInfo() speed
• Audit trail now uses SQLServer
• Annotations exported to CSV now include user and timestamp information
• GetImageInfo() and GetImagesInfo() now run as WebApi (instead of WCF)
• Added support for FTP data stores as a root-directory (mounting point) type
• Updated EF and SQLite packages
• Support for SSO login;
• GUI fixed in Image Management module
• HALO annotations are now grouped by classification
• Rename HeatmapLayer to RasterLayer
• Improve search method for AZure mounting points
• Updated and new NuGet packages

New functionality

• Channel clipping is now possible on 16-bit range (fluo slides)
• Added gamma channel handling for fluo slides
• histogram API in PMA.UI
• Support sub-paths for Azure storage
• CreateSession method added to API
• Slide upload operations can now take annotations into account
• TIFF exports now offer support for a DPI parameter
• Introduction of new PMANN API for better handling of multiple external annotation
• new explicit ClearCache() admin-API method
• Support for 2FA

• exported CSV files are now compatible with Excel and are easier to open
• image management view current directory overflow fixed
• lockfile creation sometimes created a deadlock situation on its own; this was fixed
• GetAnnotations() is improved
• Fixed cache handling when slides are uploaded a second time
• Barcode requests now come with proper CORS headers
• Fix for StreamAccessors in EnumerateFiles
• Philips iSyntax slides can now be served over S3 (better handling of FIC files)
• Improved CORS checks
• Zeiss CZI color clipping issues
• LZW decoder buffer initialization fix
• Fixed Omympus VSI transmission layer rendering
• Add optional callback in ReloadThirdParbtyAnnotations to convert an absolute path to a virtual one
• Fix RGB rendering for OME TIFF slides
• Fix audittrail oldValue, newValue datatypes to nvarchar
• Clear associated image chache when the modified data is also older than one minute
• SQLite provider configuration fix
• Fix audit trail column size for column [Key]
• Better detection of replaced data in cloud storage locations
• Fix GetImageInfo logging when in cache
• Collection mode works better now
• Fixed NDPI int64/32 offset issue
• Fix focus plane order for Ventana BIF files
• Fixed CORS for Swagger documentation
• Fix raster annotation layer rendering out of bounds
• Fix bug that generated new instances when the request code was changed

• MRXS 2.5 slides are not handled properly (applied color correction is inccorrect)

PMA.core release history